Faculty

MONICA MEDINA, PhD
Assistant Professor
School of Natural Sciences

Email: mmedina@ucmerced.edu
Phone: (209)228-7863
Fax: (209)228-1857
www: Lab website

Education:

B.S. Biology, 1989, Universidad de Los Andes, BogotáColombiaa
Ph.D. Marine Biology and Fisheries, 1998, University of Miami

Research Interests (View)

A central focus of the research in my laboratory deals with the use of molecular and genomic techniques to study marine environments, how the organisms that inhabit them evolved, and how physical and biological interactions have shaped their life history. Some of the projects currently ongoing in my laboratory are:

Genome-wide analysis of coral-zooxanthellae symbiosis: We are studying coral symbiosis by using microarray expression profiling to identify genes and cellular pathways involved in host-zooxanthellae interactions in the Montastraea faveolata and Acropora palmata mutualistic systems from Caribbean tropical reef areas. This research is an attempt to look at this important mutualistic relationship using a genome wide analysis of gene expression.

Metazoan evolution and mitochondrial genomics: We are using mitochondrial genomes to help resolve/postulate new hypotheses for the phylogenetic placement of several unresolved relationships within Lophotrochozoa, the monophyly of several phyla and lower level relationships within diverse groups such as anthozoan cnidarians and opisthobranch gastropods.
Representative Publications (View)

  1. Medina, M. (2005) Genomes, Phylogeny and Evolutionary Systems Biology. Proceedings of the National Academy of Sciences USA. 102:6630-6635.
  2. Boore, J. L., J. R. Macey, and M. Medina. (2005). Whole mitochondrial genome sequencing and gene order comparisons of animals. In Methods in Enzymology: Producing the Biochemical Data II, E. A. Zimmer and E. Roalson (eds). 395:311-341.
  3. Armbrust, E. V., J.A. Berges, C. Bowler, B.R. Green, D. Martinez, N.H. Putnam, S. Zhou, A.E. Allen, K.E. Apt, M. Bechner, M.A. Brzezinski, B.K. Chaal, A. Chiovitti, A.K. Davis, M.S. Demarest, J. C. Detter, T. Glavina, D. Goodstein, M. Z. Hadi, U. Hellsten, M. Hildebrand, B.D. Jenkins, J. Jurka, V.V. Kapitonov, N. Krö, W.W.Y. Lau, T.W. Lane, F.W. Larimer, J.C. Lippmeier, S. Lucas, M. Medina, A. Montsant, M. Obornik, M. Schnitzler Parker, B. Palenik, G.J. Pazour, P.M. Richardson, T.A. Rynearson, M.A. Saito, D.C. Schwartz, K. Thamatrakoln, K. Valentin, A. Vardi, F.P. Wilkerson, D. S. Rokhsar. (2004). The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and metabolism. Science 301:79-86.
  4. Medina, M., A. Collins, J. Taylor, J.W. Valentine, J. Lipps, L. Amaral-Zettler, and M.L. Sogin. (2003). Phylogeny of Opisthokonta and the evolution of multicellularity and complexity in Fungi and Metazoa. International Journal of Astrobiology 2:203-211.
  5. Medina. M., T.M. Collins, and P.J. Walsh. (2001). MtDNA ribosomal gene phylogeny of sea hares in the genus Aplysia (Gastropoda, Opisthobranchia, Anaspidea): Implications for comparative neurobiology. Systematic Biology 50(5):676-688.
  6. Medina. M., A. Collins, J.D. Silberman, and M.L. Sogin. (2001). Evaluating hypotheses of basal animal phylogeny using complete sequences of large and small subunit rRNA. Proceedings of the National Academy of Sciences USA 98(17):9707-9712.
  7. Medina. M., and P.J. Walsh. (2000). Population genetics of the California sea hare (Aplysia californica) based on scnDNA and microsatellite data. Marine Biotechnology 2:449-455.
  8. Medina, M., E. Weil, and A.M., Szmant. (1999). An examination of Montastraea annularis species complex (Cnidaria: Scleractinia) using ITS and COI sequences. Marine Biotechnology 1: 89-97.